FastQCFastQC Report
Fri 15 Sep 2023
EGAF00002546267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002546267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences42894282
Sequences flagged as poor quality0
Sequence length150
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCCAATATCTCGTATGC2008420.4682255784115934TruSeq Adapter, Index 6 (100% over 50bp)
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA576320.13435823450780687No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)