FastQCFastQC Report
Wed 27 Sep 2023
EGAF00002547052

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002547052
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37793492
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAGCCAATCTCGTATGC830220.21967274153973387TruSeq Adapter, Index 10 (97% over 37bp)
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT381710.10099887038752597No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)