FastQCFastQC Report
Wed 6 Sep 2023
EGAF00002547058

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002547058
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46956943
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCCTTCATCTCGTATGC3192200.6798142715551139TruSeq Adapter, Index 6 (97% over 36bp)
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1183900.2521245899674517No Hit
GGGCGACCTCGGAGCAGAACCCAACCTCCGAGCAGTACATGCTAAGACTT503400.10720459379138032No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)