FastQCFastQC Report
Wed 15 Feb 2023
EGAF00002553384

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002553384
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122011197
Sequences flagged as poor quality0
Sequence length100
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCATCCAGACTGAGGAAGACCCGGAAACTTAGGGGCCACGTGAGCCACG1564150.12819725061790846No Hit
GCCACATCTGCCAGAGCCTGGAGTCTGCGAAGGCCGGGACCCGGTTCCCC1292230.10591077145157422No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)