FastQCFastQC Report
Wed 22 May 2024
EGAF00002553398

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002553398
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences117740455
Total Bases11.7 Gbp
Sequences flagged as poor quality0
Sequence length100
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGG3410320.2896472584550484No Hit
CGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGGA2916460.24770245706966224No Hit
CGCGGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGG2557340.21720147081137064No Hit
GGTGGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGGAG1749310.14857340240446668No Hit
GGCTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGGAGGAT1360550.11555501462942366No Hit
CTCACGCCTGTAATCCCAGCTCTCAGGGAGGCTAAGAGGCGGGAGGATAG1295580.11003694524537042No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)