FastQCFastQC Report
Fri 27 Jan 2023
EGAF00002553419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002553419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences132398182
Sequences flagged as poor quality0
Sequence length100
%GC48

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTGTCTTTTG4604620.34778574225437625No Hit
GTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTGTCTTTTGTTTTTTT2414240.18234691470310369No Hit
GGGGTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTGTCTTTTGT2339670.17671466213939402No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2235890.1688761859282932No Hit
GGGGGTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTTGTCTTTT1808820.1366197007146216No Hit
GTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTGTCTTTTGTTTT1413020.10672503040865017No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)