FastQCFastQC Report
Fri 6 Jan 2023
EGAF00002553451

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002553451
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences164702921
Sequences flagged as poor quality0
Sequence length100
%GC43

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT17523381.0639386292365756No Hit
GGGGGTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTGTCTTTTG7620180.46266210421368303No Hit
GTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTGTCTTTTGTTTTTTT3891910.23629878428203469No Hit
GGGGGTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTTGTCTTTT3715620.2255952704081065No Hit
GGGGTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTGTCTTTTGT3431950.2083721393137891No Hit
GTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTGTCTTTTGTTTT2108260.12800380146263465No Hit
GGGGGTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTTTTTTTTT2103310.12770326034472698No Hit
GGTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTGTCTTTTGTTT1772890.1076416853590593No Hit
GTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTTGTCTTTTGTTTTTT1716830.10423798130453316No Hit
GGGGGTTGTTGCTTTGAGGGAAGTTACGCTTATTTTTTTTTTTTGTCTTT1659530.10075899018208669No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)