FastQCFastQC Report
Wed 22 Mar 2023
EGAF00002553587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002553587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51471764
Sequences flagged as poor quality0
Sequence length100
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1784950.3467823640161235No Hit
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCACTCAATCTCGTA543350.10556273144242735Illumina Paired End PCR Primer 2 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)