FastQCFastQC Report
Fri 27 Jan 2023
EGAF00002553621

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002553621
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences127754637
Sequences flagged as poor quality0
Sequence length100
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2755560.2156915838600833No Hit
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGAAGAATCTCGTA2025330.15853279752186217Illumina Paired End PCR Primer 2 (97% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)