FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002553673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002553673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences86884223
Sequences flagged as poor quality0
Sequence length8
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATGCGAT2692124530.985193940216284No Hit
ACCCGACG2471848428.449910865865718No Hit
TGATATTC1711869519.70288092465303No Hit
GTGATCGA1536784117.68772335110829No Hit
CATGCGAG1617380.1861534746072368No Hit
CATGCGAC1572200.1809534511231113No Hit
CATGCGAA1553110.17875627431231098No Hit
GCGATCGA1309070.15066832099079713No Hit
GGGATCGA1003430.11549047287906344No Hit
TGACATTC983180.1131597850624733No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)