FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002553674

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002553674
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences142682449
Sequences flagged as poor quality0
Sequence length8
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAATACCC4356027230.52952364169191No Hit
ACCACGAA4073845628.551834010082068No Hit
TGTCTATG3383357323.71249809428208No Hit
GTGGGTGT1996752613.994381327166593No Hit
GTGGGGGT2859550.20041357714570768No Hit
CAACACCC2319430.16255888627198992No Hit
CAAAACCC2029260.14222211731170945No Hit
GTGGGCGT2027510.1420994673283187No Hit
TGCCTATG1770060.12405590262892108No Hit
ACCACAAA1720880.12060908766711735No Hit
TGACTATG1588880.11135777463421588No Hit
TGTCCATG1548630.10853682501622887No Hit
GTGGGAGT1459200.10226906043643812No Hit
CAATACCA1446340.10136775827277818No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)