FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002553675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002553675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences103745884
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGTAAAC2669921525.735204106988956No Hit
CTCCTCTA2595281025.015749058536148No Hit
ACTGCTCG2453046123.64475587291733No Hit
GAAAGGGT2237801721.57002874446566No Hit
GAAAGGGC4363300.4205757213462078No Hit
GAAAGGGG3935410.37933167546193924No Hit
GAAAGGGA3190970.3075755757211534No Hit
ACTGCCCG2952170.2845577950832247No Hit
TGGCAAAC1883830.18158117964467874No Hit
CTCCCCTA1405330.13545886793928133No Hit
ACCGCTCG1335700.12874727637387523No Hit
ACTGCGCG1329990.12819689309312743No Hit
ACTGCACG1250820.12056574697459806No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)