FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002553676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002553676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences102961894
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTGGCT2769137326.894778178808558No Hit
CGGGCTTA2385058423.164476752923758No Hit
AAACAAAC2288918222.23073130336938No Hit
TTCATCGG2182127021.19353981580797No Hit
GCTTGGCC6338610.6156267871296152No Hit
CGGGCCTA4094380.397659740019934No Hit
CGGGCGTA3197720.31057315243249123No Hit
GCTTGGCG3012760.2926092249235431No Hit
GCTTGGCA2564200.2490435927684081No Hit
NCTTGGCT2171510.2109042399705662No Hit
CGGGCTCA2004880.1947205827429709No Hit
NAACAAAC1976310.19194576976216074No Hit
AAACAAAA1972780.19160292447611735No Hit
NGGGCTTA1907480.18526077230086696No Hit
CTCATCGG1903540.18487810645752106No Hit
NTCATCGG1816540.17642837844455347No Hit
GTCATCGG1789790.17383032988884217No Hit
AAAAAAAC1597370.1551418624836097No Hit
CGGGCTAA1570640.15254575639410828No Hit
GCCTGGCT1567680.1522582713950464No Hit
CGGGCATA1527180.14832477732004426No Hit
CGGGCTGA1525560.14816743755704415No Hit
GCTCGGCT1510550.146709616666531No Hit
TCCATCGG1462850.14207683475597294No Hit
TGCATCGG1242870.12071164891352912No Hit
TTCACCGG1215970.11809903186124372No Hit
GCGTGGCT1089500.10581584678308269No Hit
TTCATAGG1078110.1047096122765574No Hit
GCTTGGAT1061950.10314009957897627No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)