FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002553677

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002553677
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91712775
Sequences flagged as poor quality0
Sequence length8
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGTCGCTT2850692431.082827883029378No Hit
TCGTCACG2377637725.92482563088948No Hit
CACGAGAA2277205424.829751362337472No Hit
GTAATTGC1305090514.230193121950569No Hit
NGTCGCTT1807080.1970368904441066No Hit
CACGAAAA1790140.19518981952078104No Hit
AATCGCTT1618730.1764999477989844No Hit
NCGTCACG1507950.16442093263452118No Hit
NACGAGAA1461720.1593801953980784No Hit
TCATCACG1376630.15010231671650978No Hit
TCCTCACG1298040.14153317245062097No Hit
TCTTCACG1288100.14044935397495062No Hit
TCGTCACA1252860.13660692308132644No Hit
AGTCTCTT1046040.11405608433503402No Hit
TCGTCACT1010170.1101449607211209No Hit
CACGATAA984140.10730675197648311No Hit
AGTCGCTA975720.10638866831801787No Hit
GTAATTAC926700.10104372046315249No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)