FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002557717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002557717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1436612
Sequences flagged as poor quality0
Sequence length20-151
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGAGTGGAAGAAACCCACGCATCTTCTCTCCCTTCCCACCTTCCCCA69060.480714347367278No Hit
CCTGATCGTGGTCCAGAGAGGTCACAGCCCACCCACATCATCCTTGGTTC46000.3201977987097421No Hit
TCACTGTCTCCAGCCATGCACACGCCGTGGAGCAGCACGAGATGCCGGTA41820.29110156395742204No Hit
ATTTCCCAGGGCCTCTTACCCACTCCAGGCTGTCAGCAGGGATCTTGTGA39040.2717504796006159No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)