FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002557718

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002557718
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1436612
Sequences flagged as poor quality0
Sequence length18-151
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACTGTCTCCAGCCATGCACACGCCGTGGAGCAGCACGAGATGCCGGTA44200.30766831962979563No Hit
ATTTCCCAGGGCCTCTTACCCACTCCAGGCTGTCAGCAGGGATCTTGTGA43880.30544085668224963No Hit
CCTGATCGTGGTCCAGAGAGGTCACAGCCCACCCACATCATCCTTGGTTC36970.25734157865867746No Hit
ATTGGAGTGGAAGAAACCCACGCATCTTCTCTCCCTTCCCACCTTCCCCA34810.24230620376274178No Hit
CACTGTCTCCAGCCATGCACACGCCGTGGAGCAGCACGAGATGCCGGTAC26810.186619630074091No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)