FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002557740

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002557740
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1493193
Sequences flagged as poor quality0
Sequence length15-151
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGAGTGGAAGAAACCCACGCATCTTCTCTCCCTTCCCACCTTCCCCA105930.7094193449875534No Hit
TCACTGTCTCCAGCCATGCACACGCCGTGGAGCAGCACGAGATGCCGGTA103540.6934133765695392No Hit
ATTTCCCAGGGCCTCTTACCCACTCCAGGCTGTCAGCAGGGATCTTGTGA102340.6853769070709547No Hit
CCTGATCGTGGTCCAGAGAGGTCACAGCCCACCCACATCATCCTTGGTTC88520.5928235666789223No Hit
CACTGTCTCCAGCCATGCACACGCCGTGGAGCAGCACGAGATGCCGGTAC32490.21758741167417742No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)