FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002558130

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002558130
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21700665
Sequences flagged as poor quality0
Sequence length50
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1356540.6251144838188138No Hit
GGCAAATACAGCTCCTATTGATAGGACATAGTGGAAGTGAGCTACAACGT452570.20855121260108847No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA433880.1999385733110022No Hit
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGT302420.13935978459646284No Hit
GCCAGTATCAGGCGGCGGCTTCGAAGCCAAAGTGATGTTTGGATGTAAAG237710.10954042191794583No Hit
GTGGCGAGTCAGCTAAATACTTTGACGCCGGTGGGGATAGCGATGATTAT236810.10912568808375228No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)