FastQCFastQC Report
Wed 14 Sep 2022
EGAF00002558131

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002558131
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48247917
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATGC3212270.6657841829731219TruSeq Adapter, Index 5 (100% over 50bp)
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT892970.18507949265457407No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)