FastQCFastQC Report
Fri 24 Mar 2023
EGAF00002558618

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002558618
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences75355633
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACACGCCGCCGCTTGTGCTGCAGCCATGTCTCTAGTGATCCCTGAAAA1342620.17817115277898335No Hit
CCTACACGCCGCCGCTTGTGCTGCAGCCATGTCTCTAGTGATCCCTGAAA921140.122239036861385No Hit
CCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAAAG868820.115295959361127No Hit
GTTTGCCGCCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAA834540.11074686347601911No Hit
CGCCAGAACACAGGTGTCGTGAAAACTACCCCTAAAAGCCAAAATGGGAA777110.10312566812357611No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)