FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002637480

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002637480
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9261264
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTTAGTGCGGACACCCGATCGGCAT362720.3916528024684319No Hit
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGGCCGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA256150.2765821166527593Illumina Paired End PCR Primer 2 (97% over 37bp)
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCTTGTTTGGAGG169510.1830311715549843No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTTAGTGCGGACACCC164250.17735160125011015No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTTAGTGCGGACACC109900.11866630732046944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)