FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002637494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002637494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12962455
Sequences flagged as poor quality0
Sequence length75
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTTAGTGCGGACACCCGATCGGCAT868280.6698422482469564No Hit
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGCTAGCTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA529530.40851057920741096Illumina Paired End PCR Primer 2 (97% over 38bp)
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCTTGTTTGGAGG390330.30112351402569965No Hit
GAACTCACTTCGCTGGCCGTGAGTCTGTTCCAAGCTCCGGCAAAGGAGGCATCCGCCGGGCCCCTCCCCGAAGGG158780.12249222851689746No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)