FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002637496

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002637496
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences8677638
Sequences flagged as poor quality0
Sequence length75
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTTAGTGCGGACACCCGATCGGCAT580510.6689723632168109No Hit
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCTTGTTTGGAGG313540.36131952035795917No Hit
GAACTCACTTCGCTGGCCGTGAGTCTGTTCCAAGCTCCGGCAAAGGAGGCATCCGCCGGGCCCCTCCCCGAAGGG146390.16869797979588455No Hit
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAGCGCTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA96460.11115928090109314Illumina Paired End PCR Primer 2 (97% over 39bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)