FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002637500

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002637500
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13659287
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTTAGTGCGGACACCCGATCGGCAT1258290.9211974241408062No Hit
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTGAATGATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA648750.47495158422251466Illumina Paired End PCR Primer 2 (97% over 36bp)
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCTTGTTTGGAGG400340.29308996875166327No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTTAGTGCGGACACCC170510.1248308202324177No Hit
CTGACGGCAGTTGCAGCCAAGCAACGCCAGAAAGCCGGCTTCACGCTCAGGAGAAAACGCTACCTCTCTTCCTCG167170.12238559743272105No Hit
GAACTCACTTCGCTGGCCGTGAGTCTGTTCCAAGCTCCGGCAAAGGAGGCATCCGCCGGGCCCCTCCCCGAAGGG159790.11698267998907995No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)