FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002637512

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002637512
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10072978
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGCCGAACTTAGTGCGGACACCCGATCGGCAT247210.2454189813578467No Hit
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGTAGCTTATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA198780.1973398532191771Illumina Paired End PCR Primer 2 (97% over 36bp)
GGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACCTTGAGAGCTTGTTTGGAGG150200.14911181181970218No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)