FastQCFastQC Report
Fri 10 May 2024
EGAF00002637538

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002637538
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16233756
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGACAAACATCTCGTA861420.5306350545123384Illumina Paired End PCR Primer 2 (97% over 37bp)
CGAGCGACCGGCAAGGCGGAGGTCGACCCACGCCACACGTCGCACGAACG191550.11799487438396881No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)