FastQCFastQC Report
Wed 14 Sep 2022
EGAF00002637542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002637542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19214261
Sequences flagged as poor quality0
Sequence length75
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGAAATGCATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA819810.4266674632971833Illumina Paired End PCR Primer 2 (97% over 37bp)
CGAGCGACCGGCAAGGCGGAGGTCGACCCACGCCACACGTCGCACGAACGCCTGTCCGGGAGGGACCACCGGGCC200390.10429232745407174No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)