FastQCFastQC Report
Thu 5 Jan 2023
EGAF00002638104

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002638104
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences55283162
Sequences flagged as poor quality0
Sequence length151
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTTCAGAGCCGTGTAGATCTC1409380.25493838431311144Illumina Single End PCR Primer 1 (96% over 31bp)
CACATGCCTATCATATAGTAAAACCCAGCCCATGACCCCTAACAGGGGCC559080.1011302501112364No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)