FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002641464

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002641464
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20411315
Sequences flagged as poor quality0
Sequence length75
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCATAGGTGGTCAGGTCTGTGACCAGGCAGGTCAACTTGGTGGACTTGGTGAGGAAGATGCTGGCAAAGGATGG392390.1922414111976617No Hit
GTATATTACTGTGCGAGTGGCGCTTCTGTTAAAATTGTGTATCCGGGGGACTACCCTGCCTACTGGGGCCAGGGA368790.18067919680824093No Hit
GTAATATACAGCCGAGTCCTCAGCTCTCAGGCTGTTCATGTGCAGATACAGCGTGTTCTTGGAATTGTCTCTGGA366830.17971894510471276No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT334800.1640266685414438No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCCCTGATGGGTGACTTCGCAGGCGTAG307650.15072522275022457No Hit
ACCTATGACAGCGTGACCATCTCCTGGACCCGCCAGAATGGCGAAGCTGTGAAAACCCACACCAACATCTCCGAG225780.11061511715438227No Hit
ATATGATACCTCACCTCTCACTTTCGGCGGAGGGACCAAGGTGGAGCTCAAACGAACTGTGGCTGCACCATCTGT209120.10245297767439286No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)