FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002641534

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002641534
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25593243
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATTATAGCTGGCCGCTCAGTTTCGGCGGAGGGACCAAGGTGGAGATGAAACGAACTGTGGCTGCACCATCTGT460380.1798834168846832No Hit
GTCATAGGTGGTCAGGTCTGTGACCAGGCAGGTCAACTTGGTGGACTTGGTGAGGAAGATGCTGGCAAAGGATGG347660.13584054197430157No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTTTGGCCTCTCTGGGATAGAAGTTATT316130.12352088400832985No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCCCTGATGGGTGACTTCGCAGGCGTAG279190.10908738685441309No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)