FastQCFastQC Report
Fri 5 May 2023
EGAF00002720893

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002720893
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23172162
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATGTCAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAA1286600.5552351998920083Illumina Paired End PCR Primer 2 (97% over 41bp)
GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATGTCAAT380850.164356696625891Illumina Paired End PCR Primer 2 (97% over 42bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)