FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002796515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002796515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences829011
Sequences flagged as poor quality0
Sequence length251
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAACAAGAGGAATCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG20320.24511134351655164No Hit
TTGCAGAGATGTTGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA12510.15090270213543608No Hit
TTGCAGAGACTCAGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA10570.12750132386663146No Hit
ATAACAAGAGGAATCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG10450.12605381593247858No Hit
TTAACAAGAGGAATCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC10300.1242444310147875No Hit
TGGCAGAGATGTTGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA10230.12340005138653166No Hit
TCGGTGCGACTCAGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG10140.12231442043591702No Hit
TTGGTGCGATGTTGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA9820.11845439927817604No Hit
TTAACAAGATGCACCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG9750.11761001964992021No Hit
TCGGTGCGATGTTGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA9720.11724814266638199No Hit
TTGCAGAGACTCAGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG9680.11676564002166437No Hit
TTAACAAGACGAGGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG9610.11592126039340853No Hit
CTGGTGCGATGTTGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA9610.11592126039340853No Hit
GTAACAAGAGGAATCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG9490.11447375245925567No Hit
GTAACAAGACGAGGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG9460.11411187547571745No Hit
TTGCAGAGACGAGGCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA9450.11399124981453805No Hit
TTGCAGAGATGTTGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC9380.11314687018628221No Hit
TGGCAGAGACTCAGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA9300.11218186489684696No Hit
TAGCAGAGATGTTGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA9260.11169936225212934No Hit
CTAACAAGAGGAATCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG9260.11169936225212934No Hit
TCGGTGCGACAACTCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG9210.11109623394623232No Hit
GTGCAGAGATGTTGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA9090.10964872601207946No Hit
TTGGTGCGATGCACCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA9080.10952810035090005No Hit
ATGCAGAGATGTTGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA8970.1082012180779266No Hit
CGGGTGCGATGTTGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA8880.10711558712731195No Hit
TTAACAAGAGGAATCCAGGGTTTTCCCAGTCACGACGTGGTCGCTATTCT8820.1063918331602355No Hit
CTAACAAGACGAGGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG8710.10506495088726206No Hit
TGAACAAGACTCAGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG8600.10373806861428858No Hit
TTAACAAGAGGAATCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA8510.10265243766367393No Hit
TTGCAGAGAAGGAGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA8500.10253181200249453No Hit
CCGGTGCGATGTTGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA8440.10180805803541812No Hit
CTAACAAGATGCACCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG8410.10144618105187989No Hit
GTGCAGAGACTCAGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA8400.1013255553907005No Hit
TTAACAAGAAGGAGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG8330.10048117576244464No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)