FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002796517

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002796517
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1023041
Sequences flagged as poor quality0
Sequence length251
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCACACGACTCAGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG16410.16040412847578933No Hit
CGCACACGACTCAGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG12650.12365095827048965No Hit
GCCACACGACTCAGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG12040.11768834289143837No Hit
GTGTTACGACAACTCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG11870.11602663040875195No Hit
GGACACTGAGGAATCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC11530.11270320544337911No Hit
GGACTACGAGGAATCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG11290.11035725840899827No Hit
GGGTTACGACAACTCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG11230.10977077165040307No Hit
TGACTACGATAAGCCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC10980.10732707682292303No Hit
GTCACACGACTCAGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG10960.10713158123672464No Hit
ATACTACGACGAGGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC10960.10713158123672464No Hit
AGACTACGATGTTGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG10880.10634959889193102No Hit
TGACTACGAGGAATCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG10350.10116896585767336No Hit
CGACTACGAGGAATCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG10300.10068022689217736No Hit
GGACACTGACAACTCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC10300.10068022689217736No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)