FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002796519

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002796519
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1317213
Sequences flagged as poor quality0
Sequence length251
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTATTGGGATGTTGCCAGGGTTTTCCCAGTCACGACCAGGAATCAGTCGA20360.15456877513355852No Hit
TTCGGTTGATAAGCCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA20030.1520634855562464No Hit
TTTTGGTGATGCACCCAGGGTTTTCCCAGTCACGACCAGGAATCAGTCGA18520.14059988779339408No Hit
TACATTCGAGGAATCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA17970.1364244051645406No Hit
TCATTGGGAAGGAGCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA17850.13551339077279073No Hit
TTATTGGGAAGGAGCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA17610.13369136198929105No Hit
TTCATTCGAGGAATCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA17150.13019914015424994No Hit
TTATTGGGAGGAATCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA15840.12025389971098067No Hit
CGTTGGTGATAAGCCCAGGGTTTTCCCAGTCACGACGTGGTCGCTATTCT15650.11881146025737674No Hit
TTCGGTTGATGTTGCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA15450.11729310293779366No Hit
TTTTGGTGAAGGAGCCAGGGTTTTCCCAGTCACGACCAGGAATCAGTCGA15370.11668576000996042No Hit
TGATTGGGATAAGCCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC15310.11623025281408549No Hit
TGATTGGGACAACTCCAGGGTTTTCCCAGTCACGACCAGGAATCAGTCGA15210.11547107415429395No Hit
TTCATTCGACGAGGCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA15210.11547107415429395No Hit
TCATTGGGATGTTGCCAGGGTTTTCCCAGTCACGACCAGGAATCAGTCGA14860.11281394884502356No Hit
TTATTGGGACTCAGCCAGGGTTTTCCCAGTCACGACCAGGAATCAGTCGA14800.11235844164914863No Hit
CTTTGGTGATGCACCCAGGGTTTTCCCAGTCACGACCAGGAATCAGTCGA14760.112054770185232No Hit
TTCATTCGACGAGGCCAGGGTTTTCCCAGTCACGACGTGGTCGCTATTCT14710.11167518085533623No Hit
TAATTGGGATGTTGCCAGGGTTTTCCCAGTCACGACCAGGAATCAGTCGA14130.10727194462854528No Hit
ATCATTCGAGGAATCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA14100.1070441910306078No Hit
AACATTCGAGGAATCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA14020.10643684810277457No Hit
TGATTGGGATAAGCCCAGGGTTTTCCCAGTCACGACGGACGGTTTTCTGT13870.10529808011308726No Hit
TTATTGGGAAGGAGCCAGGGTTTTCCCAGTCACGACGTGGTCGCTATTCT13810.10484257291721233No Hit
TCTTGGTGATGCACCCAGGGTTTTCCCAGTCACGACCAGGAATCAGTCGA13730.10423522998937909No Hit
TTATTGGGATAAGCCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC13690.10393155852546247No Hit
TTCATTCGATGCACCCAGGGTTTTCCCAGTCACGACCAGGAATCAGTCGA13690.10393155852546247No Hit
TTCGGTTGACGAGGCCAGGGTTTTCCCAGTCACGACGTGGTCGCTATTCT13420.10188177614402531No Hit
TCATTGGGAGGAATCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA13310.10104667961825461No Hit
ATATTGGGATGTTGCCAGGGTTTTCCCAGTCACGACCAGGAATCAGTCGA13240.10051525455640052No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)