FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002796527

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002796527
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences844536
Sequences flagged as poor quality0
Sequence length251
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTATGAGATAAGCCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG13720.16245607055235062No Hit
GGTATGAGACTCAGCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA12570.1488391258631959No Hit
GGTATGAGATGTTGCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA12060.14280030691409248No Hit
GGTATGAGACTCAGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG11740.1390112440440668No Hit
GTGTATCGACAACTCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA10290.12184205291426299No Hit
GGAGCTCGATGTTGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG10250.12136842005550977No Hit
CGTATGAGATAAGCCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA9770.11568482575047127No Hit
GGGTATCGACTCAGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG9600.11367188610077013No Hit
GTGTATCGATGCACCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG9200.10893555751323805No Hit
GGTATGAGACGAGGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG9050.10715943429291351No Hit
CCTATGAGATAAGCCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG8830.10455445356977086No Hit
CGTATGAGATAAGCCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC8820.10443604535508257No Hit
CGTATGAGATGTTGCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA8690.10289673856413463No Hit
CTTATGAGATAAGCCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG8500.10064698248505688No Hit
GGCCTGCGATAAGCCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG8450.10005494141161538No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)