FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002796529

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002796529
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences732442
Sequences flagged as poor quality0
Sequence length251
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGTAAGACAACTCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC8360.11413873043872415No Hit
GGAAGGTGATGTTGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC8350.11400220085685966No Hit
TGTATATGATAAGCCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC7940.10840448800041505No Hit
ATCGTAAGACAACTCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC7560.10321636388956396No Hit
GCAAGGTGATGTTGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC7480.10212412723464794No Hit
TGTCCTTGAAGGAGCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA7430.10144147932532542No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)