FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002796531

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002796531
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences916282
Sequences flagged as poor quality0
Sequence length251
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCCTTGATAAGCCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC14300.15606549075502957No Hit
CATATATGAGGAATCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC12070.13172800513379068No Hit
GCTATATGACGAGGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC11410.12452498248355856No Hit
CATATATGAAGGAGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC11250.12277879517441138No Hit
TGTATATGATAAGCCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC10940.11939555726293871No Hit
CCTATATGAGGAATCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC10920.11917728384929531No Hit
TCTATATGACGAGGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC10900.11895901043565191No Hit
TATCCTTGATAAGCCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA10870.11863160031518681No Hit
GGTCCTTGATGCACCCAGGGTTTTCCCAGTCACGACCAGGAATCAGTCGA10860.11852246360836512No Hit
TGTATATGACTCAGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC10810.11797678007425662No Hit
CTTATATGAGGAATCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC10520.11481181557642735No Hit
TGTCCTTGAAGGAGCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA10480.11437526874914054No Hit
CTTATATGAAGGAGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC10450.11404785862867545No Hit
GTTATATGATGTTGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA10380.11328390168092355No Hit
TGTATATGACTCAGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA10120.11044634730355937No Hit
TTTATATGAAGGAGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC10000.109136706821699No Hit
GGTATATGATGTTGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA9990.1090275701148773No Hit
GGTCCTTGAAGGAGCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA9890.10793620304666031No Hit
ATTCCTTGATGCACCCAGGGTTTTCCCAGTCACGACCAGGAATCAGTCGA9860.10760879292619523No Hit
GGTATATGACTCAGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA9830.1072813828057301No Hit
GTTATATGACTCAGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC9800.106953972685265No Hit
CTTATATGACAACTCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC9760.10651742585797823No Hit
TTTCCTTGATAAGCCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC9700.10586260561704802No Hit
CGTATATGACAACTCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC9630.10509864866929614No Hit
GGTATATGACTCAGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC9570.10444382842836593No Hit
TATCCTTGAAGGAGCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA9470.10335246136014896No Hit
TTTATATGATAAGCCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC9410.10269764111921875No Hit
GATCCTTGAAGGAGCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA9380.10237023099875366No Hit
GTTATATGACTCAGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA9370.10226109429193196No Hit
CATCCTTGATGCACCCAGGGTTTTCCCAGTCACGACCAGGAATCAGTCGA9350.10204282087828856No Hit
CATATATGACAACTCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC9350.10204282087828856No Hit
TTTATATGACTCAGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA9340.10193368417146687No Hit
TGTCCTTGATAAGCCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC9330.10182454746464516No Hit
GGTCCTTGACTCAGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA9310.10160627405100178No Hit
CGTATATGAAGGAGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC9260.10106059051689328No Hit
TATATATGAAGGAGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC9250.10095145381007156No Hit
TATATATGATAAGCCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC9250.10095145381007156No Hit
AGTCCTTGATGCACCCAGGGTTTTCCCAGTCACGACCAGGAATCAGTCGA9240.10084231710324988No Hit
GGTCCTTGATGCACCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA9240.10084231710324988No Hit
GTTCCTTGATGCACCCAGGGTTTTCCCAGTCACGACCAGGAATCAGTCGA9230.10073318039642816No Hit
TCTATATGAGGAATCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC9210.10051490698278479No Hit
AATCCTTGAAGGAGCCAGGGTTTTCCCAGTCACGACCATTCCGTCAGGCA9200.10040577027596306No Hit
TGTATATGAAGGAGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC9170.10007836015549798No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)