FastQCFastQC Report
Mon 5 Sep 2022
EGAF00002796533

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002796533
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1012202
Sequences flagged as poor quality0
Sequence length251
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATGAGACTCAGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG16310.16113384482544No Hit
GGACACTGAGGAATCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG16170.15975072169389115No Hit
CGTATGAGATAAGCCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC15380.15194595545157982No Hit
GGTATGAGATGTTGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG14560.14384480568107946No Hit
CGTATGAGACAACTCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC13460.13297740964748145No Hit
GGCACACGAGGAATCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG12370.12220880812327975No Hit
GGTATGAGACGAGGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG12220.12072689048233456No Hit
TGACTACGATAAGCCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC11940.11796064421923688No Hit
GGTATGAGATGTTGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC11600.11460163089976111No Hit
CGTATGAGATGTTGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG11280.11144020659907805No Hit
GCACTACGATGCACCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG11140.11005708346752921No Hit
GTACACTGAGGAATCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG11000.10867396033598037No Hit
GGTATGAGACTCAGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC10970.10837757680779132No Hit
GGACACTGAGGAATCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC10830.10699445367624248No Hit
CGTATGAGATAAGCCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG10810.10679686465744981No Hit
GGCACACGATAAGCCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG10640.10511735799771191No Hit
CGTATGAGATAAGCCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA10630.10501856348831558No Hit
GGCACACGAGGAATCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC10600.10472217996012653No Hit
GCACACTGAGGAATCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG10470.10343785133797405No Hit
GGCACACGATAAGCCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC10220.10096798860306538No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)