FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002796535

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002796535
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences621752
Sequences flagged as poor quality0
Sequence length251
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGTATCGACGAGGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC8570.13783630772397998No Hit
GGGTATCGACTCAGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC8540.1373538002290302No Hit
ACCCTGCGACAACTCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA8310.13365457610108208No Hit
GTGTATCGATGCACCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC7790.12529111285528635No Hit
GGGTATCGACGAGGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC7560.12159188872733823No Hit
CCAGCTCGATGCACCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC7390.11885767958928962No Hit
GGGTATCGATGCACCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC7360.11837517209433987No Hit
CGGTATCGATAAGCCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC7260.11676681377784069No Hit
TGGTATCGATGCACCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC7130.11467594796639176No Hit
GCGTATCGAGGAATCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC7050.1133892613131924No Hit
AGCCTGCGATGTTGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA7050.1133892613131924No Hit
CGGTATCGAGGAATCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC7040.11322842548154247No Hit
GGCCTGCGACTCAGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA6970.11210257465999304No Hit
GCGTATCGACTCAGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC6930.11145923133339339No Hit
AAAGCTCGAAGGAGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC6840.11001170884854411No Hit
CGGTATCGACGAGGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC6810.10952920135359435No Hit
CCGTATCGACGAGGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC6600.10615164888894608No Hit
CCGTATCGAGGAATCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC6370.10245242476099796No Hit
GCGTATCGATGCACCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC6360.10229158892934803No Hit
AGGTATCGATGCACCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC6320.10164824560274835No Hit
CCGTATCGACTCAGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC6320.10164824560274835No Hit
GTGTATCGACAACTCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA6300.10132657393944852No Hit
GGAAGGTGATGTTGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA6290.10116573810779861No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)