FastQCFastQC Report
Sun 11 Sep 2022
EGAF00002796537

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002796537
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1178766
Sequences flagged as poor quality0
Sequence length251
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCACGGAAGGAGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG16490.13989205660835144No Hit
TTTCACGGAAGGAGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG16040.13607450503322968No Hit
CGAGACCGATGCACCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG15510.1315782776225307No Hit
GTTCACGGAAGGAGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG14670.12445218134897003No Hit
TGAGACCGATGCACCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG14560.12351900207505137No Hit
AGAGACCGATGCACCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG14340.12165264352721405No Hit
TTAGACCGACGAGGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC14310.12139814008887259No Hit
TTTCACGGATAAGCCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG14230.12071946425329538No Hit
TAAGACCGATGCACCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG13940.11825926434932803No Hit
GCATCCTGATGCACCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG13140.11147250599355597No Hit
TTTCACGGATAAGCCCAGGGTTTTCCCAGTCACGACCAGGAATCAGTCGA12340.10468574763778393No Hit
CAAGACCGATGCACCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG12160.10315872700773521No Hit
TATCACGGACAACTCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG12160.10315872700773521No Hit
TTATGTCGACGAGGCCAGGGTTTTCCCAGTCACGACCAGGAATCAGTCGA11990.10171654085713365No Hit
CGTCACGGACAACTCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG11940.10129236845989789No Hit
TTATCCTGACGAGGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG11860.10061369262432068No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)