FastQCFastQC Report
Sun 4 Sep 2022
EGAF00002796539

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002796539
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences750537
Sequences flagged as poor quality0
Sequence length251
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTAACAAGAGGAATCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA15320.20412051637694076No Hit
TTAACAAGAGGAATCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC12280.16361618414548518No Hit
TTAACAAGAGGAATCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG9650.12857460724787717No Hit
TTGGTGCGATGTTGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG8710.11605024136051921No Hit
CTGGTGCGATGTTGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG8640.11511757581571594No Hit
TTGGTGCGAAGGAGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA8610.11471786201080027No Hit
TTTCGAAGACTCAGCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC8290.11045424809169968No Hit
CCGGTGCGATGTTGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG8070.10752301352231802No Hit
ATAACAAGAGGAATCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA8070.10752301352231802No Hit
TGGGTGCGATGTTGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG7950.10592415830265531No Hit
CGGGTGCGATGTTGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG7830.10432530308299257No Hit
TTTCGAAGATAAGCCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC7820.10419206514802068No Hit
TCGGTGCGAGGAATCCAGGGTTTTCCCAGTCACGACTCAGGAGTCAGTCC7790.10379235134310501No Hit
TCGGTGCGATGTTGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG7780.10365911340813311No Hit
TTTCGAAGACTCAGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG7700.10259320992835796No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)