FastQCFastQC Report
Sat 3 Sep 2022
EGAF00002796541

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002796541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences584668
Sequences flagged as poor quality0
Sequence length251
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCGGTTGACAACTCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG10480.17924702566242723No Hit
TTCGGTTGATGTTGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG9070.15513077507234876No Hit
TCCGGTTGACAACTCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG8090.1383691257260531No Hit
TTCGGTTGATGTTGCCAGGGTTTTCCCAGTCACGACGGAATCAGGACTCA7850.13426423200859292No Hit
TTCATTCGATGCACCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG6840.11698947094761472No Hit
TTTTGGTGATGCACCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG6690.11442391237420212No Hit
CGTTGGTGATGTTGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG6510.111345242086107No Hit
TTATTGGGAAGGAGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG6490.11100316760965197No Hit
TCATTGGGAAGGAGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG6480.11083213037142448No Hit
TTCGGTTGATAAGCCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG6420.10980590694205943No Hit
TTATTGGGACTCAGCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG6110.1045037525570067No Hit
TTCATTCGATAAGCCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG6100.1043327153187792No Hit
TTATTGGGATAAGCCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG5980.10228026846004913No Hit
TGCATTCGATAAGCCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG5900.10091197055422908No Hit
ATCATTCGATAAGCCCAGGGTTTTCCCAGTCACGACAGGAATCAGCCCAG5870.10039885883954655No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)