FastQCFastQC Report
Thu 23 May 2024
EGAF00002796651

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002796651
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences78608594
Total Bases11.7 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCTACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAG3253940.413942017586525No Hit
GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGA2925330.3721387002545803No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGT2181100.27746330127721147No Hit
CGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGG1328520.1690044220864706No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATAC1205360.15333692395007092No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACC1179730.15007646619401438No Hit
TTCGGTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTC1130520.14381633641736424No Hit
GTGCGGTGCGTGACGGGCGAGGGGGCGGCCGCCTTTCCGGCCGCGCCCCG1118840.14233049378799473No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACT1041110.13244226197456221No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGG1012610.12881670418885752No Hit
GTGCGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCC921630.11724290603645704No Hit
GGTGCGTGACGGGCGAGGGGGCGGCCGCCTTTCCGGCCGCGCCCCGTTTC797760.10148508698679944No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)