FastQCFastQC Report
Thu 26 Jan 2023
EGAF00002796653

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002796653
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122432420
Sequences flagged as poor quality0
Sequence length150
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCTACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAG5121350.41830015285167116No Hit
GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGA4593100.37515390122975595No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGT3444080.2813045760265132No Hit
CGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGG2088430.17057818509182454No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATAC1906160.1556907884365922No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACC1859370.15186908826926726No Hit
TTCGGTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTC1794560.14657555572290412No Hit
GTGCGGTGCGTGACGGGCGAGGGGGCGGCCGCCTTTCCGGCCGCGCCCCG1738900.14202937424580842No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACT1639540.13391387673297644No Hit
CCCTCCTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGG1588910.12977853414969662No Hit
GTGCGGTGTGTACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCC1442100.11778742917929745No Hit
GGTGCGTGACGGGCGAGGGGGCGGCCGCCTTTCCGGCCGCGCCCCGTTTC1236640.10100592637146272No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)