FastQCFastQC Report
Thu 23 May 2024
EGAF00002796661

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002796661
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences124218763
Total Bases18.6 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCTACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAG3377540.2719025627392538No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGT2399220.19314473450359507No Hit
GTGCGGTGCGTGACGGGCGAGGGGGCGGCCGCCTTTCCGGCCGCGCCCCG2341200.18847394253958236No Hit
GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGA2324790.18715288607406275No Hit
GGTGCGTGACGGGCGAGGGGGCGGCCGCCTTTCCGGCCGCGCCCCGTTTC1880020.1513475061734434No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACT1509570.12152511935737116No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACC1503780.12105900619860464No Hit
CGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGG1478420.11901744666383451No Hit
GCTGCGGATATGGGTACGGCCCGGCGCGAGATTTACACCCTCTCCCCCGG1391360.11200884362372857No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATAC1344520.10823807672275725No Hit
TTCGGTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTC1282580.10325171246472645No Hit
TGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTC1250860.10069815298353921No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)