FastQCFastQC Report
Thu 16 Mar 2023
EGAF00002796665

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002796665
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59927086
Sequences flagged as poor quality0
Sequence length150
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCACCTACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAG1621090.2705103999216648No Hit
AAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGT1150780.1920300279576417No Hit
GTGCGGTGCGTGACGGGCGAGGGGGCGGCCGCCTTTCCGGCCGCGCCCCG1130980.1887260128082984No Hit
GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGA1114040.185899244291638No Hit
GGTGCGTGACGGGCGAGGGGGCGGCCGCCTTTCCGGCCGCGCCCCGTTTC905730.15113866874821846No Hit
ACCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACT723450.12072170504002146No Hit
CGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGG719080.11999248553483811No Hit
ACGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACC718140.11983562824997031No Hit
GCTGCGGATATGGGTACGGCCCGGCGCGAGATTTACACCCTCTCCCCCGG672780.11226642990783833No Hit
CTGGTCTGTCTTGCGCCGGTCCAAGAATTTCACCTCTAGCGGCGCAATAC650290.10851353593264988No Hit
TTCGGTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTC617040.10296512665408093No Hit
TGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCGTCTTCTCAGCGCTC605950.1011145444315447No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)