FastQCFastQC Report
Sat 13 May 2023
EGAF00002796759

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002796759
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences51499183
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGA2689320.5222063425744056No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT2459200.4775221385550913No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA1738340.337547102446266No Hit
CTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGA1466580.28477733326371407No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT1396540.27117711750883505No Hit
CTCCATTCCACTTGCGAATAACTGTGCCGAGTTTTGCACCATACTTGAAT1365910.2652294503390471No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT1273250.24723693189462828No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC1209880.23493188231743403No Hit
GGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCA1207190.23440954393393No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG1198520.23272602208077747No Hit
CCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATG1145390.22240935356197786No Hit
TGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGAC1017430.19756235744555406No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG1007400.19561475373308349No Hit
CAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAG998280.19384385185295075No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT878280.1705425113248884No Hit
CCCAGTTCTTTAAGTAAGACATCTTCTCTCCATTCCACTTGCGAATAACT845380.16415406046344463No Hit
CTGCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGT768570.1492392607471074No Hit
GCCCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT761090.14778681052085818No Hit
GTCCTTTCGTACAGGGAGGAATTTGAAGTAGATAGAAACCGACCTGGATT658660.1278971746017796No Hit
GGCTATTCACAGGCGCGATCCCACTACTGATCAGCACGGGAGTTTTGACC654100.12701172366171323No Hit
CCAGAAATGACATCACAGTATGTGCCAGCAGGAAGACCAGTTTGCAAAGT583550.11331247720958991No Hit
CTCGCTATGTTGCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATC575020.11165614025372013No Hit
GCCCAACCCAATCATTAACATCTTTTCCATTTTCAAAATATCTTGGCCAA551530.10709490284535193No Hit
CCTGCACTCACAGCATTACCACACATATGATTAATTACAGCATCCACATA532260.10335309591222058No Hit
CTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCAGCACG530070.10292784644758346No Hit
CTCCATTATCATTTGGTGGCCCAACCCAATCATTAACATCTTTTCCATTT528880.10269677482068015No Hit
CTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTGATGC525700.10207928929668651No Hit
GTGGGTATAATACTAAGTTGAGATGATATCATTTACGGGGGAAGGCGCTT522350.1014287935402781No Hit
CTTGGGAGCTAAATATCGCTCACATTCAAGAGCAATATCAACCCATCGCC516940.10037829143813795No Hit
CTCGATGTGAATGATGCTTTTCATGGAATTTTCTTTTATACCCATGATGT515820.10016081225987605No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)