FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002797476

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002797476
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24492339
Sequences flagged as poor quality0
Sequence length65
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGCTCGGTAATCTCGTATGCCGTCTTCTGCTTG12729915.1975068612270965TruSeq Adapter, Index 9 (97% over 37bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACGCTCGGTAATCTCGTATGCCGTCTTCTGCTTGA829250.3385752581654206TruSeq Adapter, Index 9 (97% over 36bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)