FastQCFastQC Report
Tue 13 Sep 2022
EGAF00002797491

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002797491
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23532667
Sequences flagged as poor quality0
Sequence length65
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGACTGGAATCTCGTATGCCGTCTTCTGCTTG11720214.980400224079999TruSeq Adapter, Index 23 (97% over 38bp)
ATCGGAAGAGCACACGTCTGAACTCCAGTCACCGACTGGAATCTCGTATGCCGTCTTCTGCTTGA465240.19769964874784487TruSeq Adapter, Index 23 (97% over 37bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)