FastQCFastQC Report
Thu 1 Sep 2022
EGAF00002797853

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00002797853
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences57772
Sequences flagged as poor quality0
Sequence length35-151
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAATACACCAGTCTTGTAAACCGGAGATGAAAACCTTTTTCCAAGGACA780.135013501350135No Hit
GCCTATATACCGCCATCTTCAGCAAACCCTGATGAAGGCTACAAAGTAAG770.13328255902513328No Hit
ATATAAATGCGTAGGGGTTTTAGTTAAATGTCCTTTGAAGTATACTTGAG760.13155161670013155No Hit
GTATAGGGGTTAGTCCTTGCTATATTATGCTTGGTTATAATTTTTCATCT730.12635878972512635No Hit
CCCTTAACAGTACATAGTACATAAAGCCATTTACCGTACATAGCACATTA710.12289690507512291No Hit
TCCTTGTACTATCCCTATGAGGCATAATTATAACAAGCTCCATCTGCCTA640.11078030880011078No Hit
CCCCAGGGTTGGTCAATTTCGTGCCAGCCACCGCGGTCACACGATTAACC640.11078030880011078No Hit
CATTGGGACAGACCTAGTTCAATGAATCTGAGGAGGCTACTCAGTAAACA640.11078030880011078No Hit
CTTTAGTAGGTATGTTCGCCTGTAATATTGAACGTAGGTGCGATAAATAA630.10904936647510904No Hit
GTACCATAAATACTTAACCACCTGTAGTACATAAAAACCCAATCCACATC620.10731842415010731No Hit
TTATGGTACCGTGCAATATTCATGGTGGCTGGCAGTAATGTACGAAATAC590.10212559717510213No Hit
TTTATATAGAGGAGACAAGTCGTAACATGGTAAGTGTACTGGAAAGTGCA580.10039465485010039No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)